NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1018178

Scaffold Ga0196899_1018178


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1018178 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2631
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F043905Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10181781F001120N/AQDKSPINFDKTIAGFNVTEHGIKSYSKSFSLGPFQLTLNARESGVRGSISIPGTGLSRRNLKLF
Ga0196899_10181783F001807N/AMTVLAIENTSFTNTHVTVTAVVDEMRLLYRATYLDPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDDLDPQWQLLDTSIGDPD
Ga0196899_10181786F043905N/AMQFQLPSNLQTELLAYDPTLKVLAKQAKATTTKKSKYPLGNIPHLIPHNVVRESDQQAAIDHINQQKAPDRYRVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLPPKQDKSQYVYGHGYAFKNTAAAAKVAPSWIWNSKDKCIEHTIGRGVQTFTFSETSTEEDIKASFDSGYKIQQWQASNLYCQKGYQIRDHAVIPFEKSLKEDIPTWDDCRGIFDRLRCKNI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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