NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1025255

Scaffold Ga0196899_1025255


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1025255 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2134
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015341Metagenome / Metatranscriptome255N
F073490Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10252554F073490GGTGGMIQVDFDTTLGDFQRGFFDRVSSKVIAPKLRRFLSRAGGSIRKAAGRQFQSRAQKPLRELTPKQLRRFRQEQAEYKAGKRQERPRKPDKVALPGQSPRVHTNKKSDSLLAGRIFYALADDEQSVVIGPDKLRRKSSRMTLEELEQRFPFMEPAFEAIEPRLPSYWPR
Ga0196899_10252555F015341AGGAGMTNAADGSVLGDDCITYYSATLGGAGALTEIPVIIDDTISSERRAVESNCRGDAEIAEHTGKPKHSVSGTLLVKRGTVGATYETLRDAYVNNTILAWAFATGDSADIGQYIFRMEGRLKRWEESRPDNDTVKVSFEIAKAADNTYASNWA
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