NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1036588

Scaffold Ga0196899_1036588


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1036588 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1686
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009001Metagenome324Y
F010465Metagenome303Y
F047385Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10365881F010465GAGMNNREILLDPIDMTEELMFHMFNNDMNRELSGRFLDLYLSLQLYKEHLEKLEEV
Ga0196899_10365882F009001GAGGMSVTIYLTDHNGRKIAFFYRIDNERYLTCPQLLWSCRDHPEYQGTAESKEHFMEQCKGVIKMLNRNLPVRESKELLMSKATKTCDVCDKSLLGMEREGTTCDEHDFNR
Ga0196899_10365883F047385GGAGMKIQQPSDNSLYVTIGNYVYYFDDSIDGEAIVKRWRVDDENGDVTEDIQE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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