NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1047127

Scaffold Ga0196899_1047127


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1047127 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1430
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027356Metagenome / Metatranscriptome195Y
F027832Metagenome / Metatranscriptome193N
F051561Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10471271F051561GGAGGMSVDFDEEFDLLKALREAQALEMVEETENGWQTKVVPDALAQAAVKEIVQLRQEVNDLRNRLAKIKS
Ga0196899_10471273F027356GAGGMKIKGIHMNDRGKSVDRFDLEEAIMNAWRTSDDIKALYTSAERMDEDQMMNALLGLEIFAEMRFNELWNTFEQCIQNGVFNDDARRADKIAQALDEATQGFGQEQI
Ga0196899_10471274F027832N/AIVPPWGLPDSPRSAFLGYIMARKKQLQIAIGPIEHVPSDKDRSYNELVCSICHCEFDIELEGGIDGYLGVLPVAICAMCYSGLDEFFTQMHGCYDDEHDGYEDHDED
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