Basic Information | |
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Taxon OID | 3300022187 Open in IMG/M |
Scaffold ID | Ga0196899_1078380 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1016 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006786 | Metagenome | 364 | N |
F016968 | Metagenome / Metatranscriptome | 243 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196899_10783801 | F016968 | AGGA | MNITNPPKALIALVGLICLTVLLAVNAIPTEAGTGMIGSILGYAIGNGIAARSGTAVDPIIG |
Ga0196899_10783802 | F006786 | GGA | MSRPYTGTKDGVARGARAGTKQFQALMAFLFQMRNLGIYANRPVRGGSSLSVHATGRACDLGGSQDKVKAAIDFLYAFRNELGVEEIHDYRNVWIPGEYGAAYRCSRDNGGLLAGWRVYDKWTIGKGGNWVHYEISPDMADNPDAVTAAFTDILNRIVAALEGNK |
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