NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190313_1005703

Scaffold Ga0190313_1005703


Overview

Basic Information
Taxon OID3300022188 Open in IMG/M
Scaffold IDGa0190313_1005703 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5212
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F017081Metagenome242Y
F056226Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0190313_10057031F017081GGAGMVEGKKRLWWKGVCIFGILTLFVATAQAIDITEITATETQIKIIIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSNVVSVNVSKEEELVGQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190313_10057032F056226AGGAGGMRAYDILLFLVCLEASIGFVASIGLFSTTYIDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190313_10057034F007460AGGTGGMDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTEIVGVDETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVRRHKYTYYQQGGGEEW
Ga0190313_10057035F015290AGGAGGMLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTISDATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV
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