Basic Information | |
---|---|
Taxon OID | 3300022195 Open in IMG/M |
Scaffold ID | Ga0222625_1053900 Open in IMG/M |
Source Dataset Name | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1788 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9201 | Long. (o) | -106.9487 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006858 | Metagenome / Metatranscriptome | 363 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222625_10539001 | F006858 | N/A | PIAFALCLTALASALFLSGCGKGAGGSGLHVKSPATGEKDVAVKSAYAFAVTKSFTDINNKITMASAYNVFAANYDLDAANFAMTLNKPLTSDDQIRVEFSLIGEQGTDGKSALKAGTYSAKADKFMKVETVGIVSRKGAADNKVWLDRSTLTGEVKVTSVSGDTMSGDVDLSAGETSIKGSFTAKILTRK |
⦗Top⦘ |