Scaffold Ga0196905

Basic Information
Taxon OID	3300022198 Open in IMG/M
Scaffold ID	Ga0196905_1000310 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022198 Open in IMG/M

Scaffold ID

Ga0196905_1000310 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19841
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19841

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F003687	Metagenome / Metatranscriptome	473	Y
F043888	Metagenome	155	Y
F054793	Metagenome	139	Y
F067679	Metagenome / Metatranscriptome	125	N
F105068	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100031010	F043888	AGGAGG	MGGGGTKVEYKSPKIEKDNSFEKYLAYQQQKEALAEQRAADEKAEAAAKEEARRSSAQAGYGGLLSGIESQLRQGLISYSDATGQLRDYAAKYDLVPPEAEIAGLTKLYTEELLPGRRSTGVSAAYEELLGRQATEEEKTKALERFQQGYYTSVQDLKDALAKSSEYQDKYNQSYLDNYYDTMFGKQAVDESGKKTGQRTFNFASNLLPKYAEGLEGSTKITTPDFGESFTGTAAEIEEQQQNIRDTRKYLYSAGLTNLQGEIDKETQKLKNEGEKELAKIKSQGSIYQQIVGSFSFS
Ga0196905_100031014	F067679	AGAAGG	MATPVQKQKAQSFLGQVYQDTLAGIGGLFPEKVKQGFQAGVDLMAPEARAELVDEKGERILSSIANYSTASPRFKKELAEVKGITLREKPQEFLGAYAARLLTDVGTDSTRHIYWRYNHPMAIADVIAEKAAGPMYKEFNPTQKAAIGLAVGAPTAASLGVFDITNPGELFRQKGFAQNYAEQGSEDRRESGQPGLELIERMFLGRQGRPLKYETAKEDIPSLTKERYTNYMKNYYQDKGVTGLGLVKFTPENLQGEPEARIVGFPIGLQSVGALTGGSLALGSAMKSQPPVTIEMKGTKEIKRRVPGSARRAAGITLAGSLAGGLAGNLTNRAIASINNNPERLPDTLEYQPGM
Ga0196905_100031025	F105068	N/A	MDILYFTLTTEDAVYKFQVNKAENLVRVTKMILKNKCFGEWHRSTSMTVDAGRKLVRQLQAR
Ga0196905_100031027	F054793	GGAG	MHVYQLTENPRDSFYGGDDLSTVIGYYASKRKADAKAVELSARQAKEEELDWITNPCECGDRQCDRRDKFFTSWHVDRIDLTELSMRRLMEIELADADED
Ga0196905_100031030	F003687	N/A	MNYQAVEHLLTQDARLLARRDSPVIDQELEEQRQAALDLFFQWQDGMCQFQELMPFVAIIQRKVDLNRDLLRWERKHED
Ga0196905_10003109	F001190	GAG	MTSTKTASSVPSDQSDKDDYFDINKFEKLLERLEGSKGRQQRQKSLESRRDIYAQGLASMMSNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196905_1000310

Overview

Ecosystem & Geography

Associated Families

Sequences