Basic Information | |
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Taxon OID | 3300022198 Open in IMG/M |
Scaffold ID | Ga0196905_1000823 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12332 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (27.59%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F002985 | Metagenome / Metatranscriptome | 515 | Y |
F003601 | Metagenome / Metatranscriptome | 477 | Y |
F019817 | Metagenome | 227 | Y |
F020341 | Metagenome | 224 | Y |
F042290 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196905_100082310 | F001807 | GGAGG | MTVLAIEHTSFIDDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCEATIELDPGESIPLDEDGFCQYLDYLDPDWQVLDLTD |
Ga0196905_100082312 | F003601 | AGG | MTDYTDDQLLAMAMANISEYIYDHSPHYVLIEDPRNAEDYDSWTYGMEVLPQDHTWRSTSITVDVSPSKAD |
Ga0196905_100082321 | F042290 | N/A | MTLTYRGVKYNQEEQAKKDKVWWNLAHRPWLCLKYRNACYFPYVTGGQIK |
Ga0196905_100082324 | F020341 | N/A | MKGFSSTKQTTRFSSYWVASYAKDNEDEPLGIHKKVLSYKPGQDKEVLMTKYCHSLMNLNPHVWEVLVHQGPSEIPDSGDQIVIRLSRELFNGCSELK |
Ga0196905_100082326 | F002985 | N/A | MSYVIACWQWGQPHAITANSTTNKFELIPLDSEVALNRIFSHPYRAGAQQILTWINENDEDLSCKNLKVSDEAQFRK |
Ga0196905_10008234 | F019817 | N/A | MPTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIIKDP |
Ga0196905_10008236 | F001165 | N/A | MTTPNTPRIPDSLDMQRLQAMQLVAKMKESADKYGIGFIGGFIAPDGEKFIMTNMEDEDEINMLMPEDLK |
Ga0196905_10008238 | F001120 | N/A | MTHKKSPINFDKTIAGFNITEKGIQSYSKSFSLGPFQITLNARESGVRGSISILGTGLSKRGIKLF |
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