NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1000823

Scaffold Ga0196905_1000823


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1000823 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12332
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002985Metagenome / Metatranscriptome515Y
F003601Metagenome / Metatranscriptome477Y
F019817Metagenome227Y
F020341Metagenome224Y
F042290Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100082310F001807GGAGGMTVLAIEHTSFIDDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCEATIELDPGESIPLDEDGFCQYLDYLDPDWQVLDLTD
Ga0196905_100082312F003601AGGMTDYTDDQLLAMAMANISEYIYDHSPHYVLIEDPRNAEDYDSWTYGMEVLPQDHTWRSTSITVDVSPSKAD
Ga0196905_100082321F042290N/AMTLTYRGVKYNQEEQAKKDKVWWNLAHRPWLCLKYRNACYFPYVTGGQIK
Ga0196905_100082324F020341N/AMKGFSSTKQTTRFSSYWVASYAKDNEDEPLGIHKKVLSYKPGQDKEVLMTKYCHSLMNLNPHVWEVLVHQGPSEIPDSGDQIVIRLSRELFNGCSELK
Ga0196905_100082326F002985N/AMSYVIACWQWGQPHAITANSTTNKFELIPLDSEVALNRIFSHPYRAGAQQILTWINENDEDLSCKNLKVSDEAQFRK
Ga0196905_10008234F019817N/AMPTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIIKDP
Ga0196905_10008236F001165N/AMTTPNTPRIPDSLDMQRLQAMQLVAKMKESADKYGIGFIGGFIAPDGEKFIMTNMEDEDEINMLMPEDLK
Ga0196905_10008238F001120N/AMTHKKSPINFDKTIAGFNITEKGIQSYSKSFSLGPFQITLNARESGVRGSISILGTGLSKRGIKLF

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