NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1001078

Scaffold Ga0196905_1001078


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1001078 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10598
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006094Metagenome / Metatranscriptome382Y
F026258Metagenome / Metatranscriptome198Y
F028350Metagenome / Metatranscriptome192Y
F035125Metagenome / Metatranscriptome173N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100107812F006094AGGAGMLLHEFYSDEDCSRGDTSYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGRSEQYAEDTAEDWVMGVRR
Ga0196905_100107814F035125AGGAGMKTAKKKITVRFVVEQDFEVEVRDSDLEMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGDMRPVHDSHLFDSNLYNLGLHSEYIQPWLFEGQTDKDPYADEEEEEMENA
Ga0196905_100107818F028350GGAMIQRSGRINPIARALLQTNRRRSQVVPDKTKYNRKKEKDLANQNRSNEELENPKG
Ga0196905_100107821F026258GAGGMNDTMYGMPKEWLDELIADWQEPLMGGLTMLAMSVLSDAQECIAIGQDNTARQYINRAKYIIKQMEQVK
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