NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1001756

Scaffold Ga0196905_1001756


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1001756 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8222
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F002985Metagenome / Metatranscriptome515Y
F020341Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100175616F001807GGAGGMTVLAIEHTSFIDDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCEATIELDPTEQIPLDEDGFCSYLDHLDPDWQVLDLTDEQ
Ga0196905_10017562F002985N/AMSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSSKELQVCDESQFRK
Ga0196905_100175620F001165N/AMTTPNTPRIPDSLDMERLQAMQLVAKMKESADKQGIGFIGGFIAPDGDKFIMTNMDDQDEINALMPEDLK
Ga0196905_10017564F020341N/AMKGFNTTKQATRSSSYWVASYTKDNEDEPLGIHKKVLSYAPGQDKEVLMTKYCHSLMKLNPHVWEVLVHQGPSKTPDHGDQIVIRLSREPFKGCGQLT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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