NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1002195

Scaffold Ga0196905_1002195


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1002195 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7305
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F021750Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10021957F000325AGGAMKTAEGNDKLGKNCIVVSRPVGKTCPVTCVYLDKDCYALQTERQYKNAREAAFHNVITEKGRIRSMILDAIKRDKSIRWHERGDWFNDGVLDEDYVNNVCAACESVIESGYTLPDMWFYTHIYDSRLAAMNKYMAVYASVHNAEDMVAAKLAGFTRFAWCDSDMKIAPKRPKRKGPKRDAWHKALPKLVVLSGESFVTCPEIRKGRDFVTCTGNKDSRACNMCVTGKKNVLFPCH
Ga0196905_10021958F021750GAGGMKTFNIKCVTLEDFVDTHELDLYAVDDILLNSDYSYGTNDDTLVGYETLCDMCNTRPLSTYRGIDLMVSLGS
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