Basic Information | |
---|---|
Taxon OID | 3300022198 Open in IMG/M |
Scaffold ID | Ga0196905_1008392 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3497 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F007026 | Metagenome | 359 | Y |
F020342 | Metagenome / Metatranscriptome | 224 | Y |
F043905 | Metagenome | 155 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0196905_10083921 | F007026 | N/A | MAYPEINWKKNEYHQLQEVVNLLKAIQERESKRHQMDEHLTPCTAEVVLEVIEMLQDEIDYDPTSNDPGEPPITLDEMHTAAWKEHQEMHR |
Ga0196905_100839210 | F043905 | N/A | MQFQLPSNLQTELLAYDPTLKVLAQKDKPTTAKKAKYPLGNIPHLIPHNVVRESDQQAAIDHINQQKAPDRYRVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLSPKQQANEYVYGHAYAFKNTAAAAKTAPHHIWTSKDKCIEHEGSRGVQTFTYSMNITEENIKAKDEYGFSSYKWRASNLYCQKGYQIKDNVVVEFEKSLRENIPTWEDSRGLFDRMRCKNIFDAIEMPKQMYEFIDPKHGFTVDALVAAAEEFNVRSTMTSGTYCALTSIAHIITK |
Ga0196905_10083922 | F001165 | N/A | MNNNTPRIPDSLDMQRLQAMQLVAKMKESADKHGVGFIGGFVAPNGEKFVMSNMDDDETQALLPDNLK |
Ga0196905_10083924 | F001120 | GAG | MTDKKSPINFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF |
Ga0196905_10083926 | F020342 | N/A | MSAVTDNINLFDRINLAACAQRRASENVLNSTRFEGEYDTARLWMKYRLVKYTNYSYIDE |
Ga0196905_10083927 | F001807 | N/A | MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQVLSPDDI |
⦗Top⦘ |