NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1008392

Scaffold Ga0196905_1008392


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1008392 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3497
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F020342Metagenome / Metatranscriptome224Y
F043905Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10083921F007026N/AMAYPEINWKKNEYHQLQEVVNLLKAIQERESKRHQMDEHLTPCTAEVVLEVIEMLQDEIDYDPTSNDPGEPPITLDEMHTAAWKEHQEMHR
Ga0196905_100839210F043905N/AMQFQLPSNLQTELLAYDPTLKVLAQKDKPTTAKKAKYPLGNIPHLIPHNVVRESDQQAAIDHINQQKAPDRYRVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLSPKQQANEYVYGHAYAFKNTAAAAKTAPHHIWTSKDKCIEHEGSRGVQTFTYSMNITEENIKAKDEYGFSSYKWRASNLYCQKGYQIKDNVVVEFEKSLRENIPTWEDSRGLFDRMRCKNIFDAIEMPKQMYEFIDPKHGFTVDALVAAAEEFNVRSTMTSGTYCALTSIAHIITK
Ga0196905_10083922F001165N/AMNNNTPRIPDSLDMQRLQAMQLVAKMKESADKHGVGFIGGFVAPNGEKFVMSNMDDDETQALLPDNLK
Ga0196905_10083924F001120GAGMTDKKSPINFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF
Ga0196905_10083926F020342N/AMSAVTDNINLFDRINLAACAQRRASENVLNSTRFEGEYDTARLWMKYRLVKYTNYSYIDE
Ga0196905_10083927F001807N/AMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQVLSPDDI

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