NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1027562

Scaffold Ga0196905_1027562


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1027562 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040583Metagenome / Metatranscriptome161Y
F054790Metagenome / Metatranscriptome139Y
F074540Metagenome119N
F096774Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10275621F074540AGGAMKGKHMLKMKSDGNTFVLTGLPFGETIEWNKRTHYAYCYNGNKIVDSFSFAWEKNNPSMLDFTEAAQNFIEYYFEEREYANHC
Ga0196905_10275624F096774GGTGGMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMHKVNT
Ga0196905_10275626F054790AGGAMTLNEIWASVYAAFPNNAFDYVGKPFYNDNDGTIQLWDGSKMVTYAEVPF
Ga0196905_10275628F040583AGGMFVYLVTTTDGFVSRVVTDGDPTDHPTFWGRVANVETVGEATLHAV
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