NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1012930

Scaffold Ga0196901_1012930


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1012930 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3491
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026851Metagenome196Y
F101070Metagenome102Y
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0196901_101293012F101070GGAGGMGRGRINVDLLSVESGDLIVTDGRMSLELGDVLLAIRKLSDLEINAGRHRPAYIDGRRIGDHWRLLSRLGVVDIWLDPHASWVTRVVKGQKKTST
Ga0196901_10129302F026851AGGAGMTPKEAQRFTKLLHNTDDMTPLEKAEVGRLKTAYLSAVINETEAYVAAKEAYEDAKEHLDLQDPGEREVLMTLLKSMRDSERNVMIIATELETHFGICG
Ga0196901_10129306F105104AGGAGMLHHIYYINPEGADNYMIVPFDEIKATVAFLESLDYEVIAYWPIEEAA
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