NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1021269

Scaffold Ga0196901_1021269


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1021269 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2609
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003073Metagenome / Metatranscriptome509Y
F028792Metagenome / Metatranscriptome190N
F029289Metagenome / Metatranscriptome189N
F029934Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0196901_102126911F029289GGAGMSSAIEPRYPNAASDPRLTNVADKWRTLNRQISDKDWNGEPVTNAERDKLTTLKRELNDGKFYTPNF
Ga0196901_10212692F003073AGGAGMAKKLENMTPDERIAYFAALREKDRIQRRNRIAKLSLDQRVAVIKVYELLDEILETALYPDMGGIKAVTAYDLQELSDAKDRLRHEFNFDVREQG
Ga0196901_10212696F028792GGAMVEMSNRGDYKVRVRLTTEREVIVNADGFDEAEAKALREVVALVDGYDAEVLWALEHGSLSDWEKKDGNDN
Ga0196901_10212697F029934GGAGMATITKTCLACNGGGIAEYDKPRVDHANGGWIDSTYGKCDVCDGQGDLHVLSEFTSLDMMLFLNEVAKILEDADIVDSTLDDIYGHVKDARDKVREYIKFHGYDGDDR
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Institute for Fundamental Biomedical Research
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