NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1190082

Scaffold Ga0196901_1190082


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1190082 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022192Metagenome215N
F084174Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0196901_11900821F084174GGAGGMATQSVEFSAPSGQTVTARLFSAGSDTVVQTASAVTEAANRDGVYTATFTDAAAGLYRLIATNSGGTLLAQWWVDLTLTTATFQSYEMPVSVV
Ga0196901_11900822F022192N/ATGGYPVPDEGFNAIEHARNKILRANQFQQLVLQQWVATYEDFYGLQPSGGSRYTTAEMQAVIDAMPATTARDIIADSGAFVSFVNTAAPGAIGDKYQSPAFEMTDDGNMITVGELKAEWQPKPEEAADGNAVG
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Institute for Fundamental Biomedical Research
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