NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224496_10002205

Scaffold Ga0224496_10002205


Overview

Basic Information
Taxon OID3300022204 Open in IMG/M
Scaffold IDGa0224496_10002205 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11635
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.15Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093890Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0224496_100022052F093890GGAGGVQSQLRVFFILVCLLSLSLSSTAICASPTFLNRQAYPLHLGLTDIGQFHQNDLKTFEVWTQWNNPSHEKIVVRITFTFIDRDSADSQLGEDGEDDFLMTVTETVTIPEQVSNWGKYVQLTAIGQKLNLGFDHPGEGSGLELYLDAQVISVQHLPTE
Ga0224496_100022053F093890GGAGGVRPRLHVFLALFFCILFCSVPSIGLGASPAFLNRQAYPLHLGLTDIGQFHQNDLKTFEVWTQWSNPSHEKIVVQITFTFIDRDSADSQLGEDGEDDFLMTVTETVTIPDQVSNWGKYVQLTAIGQKLNLGFDHPGEGSGLELYLDAQVISVKHLPAE
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