NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224499_10065593

Scaffold Ga0224499_10065593


Overview

Basic Information
Taxon OID3300022206 Open in IMG/M
Scaffold IDGa0224499_10065593 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1211
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.7Long. (o)-122.34Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005564Metagenome / Metatranscriptome396Y
F041207Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0224499_100655932F041207GAGGMHKAVRQEDLERIDTMTIIEAVAYANQLSSRLNCNDCTDEERKNGLVLLGRLTDRVHFLKIKLEPAIS
Ga0224499_100655933F005564GGAGMHKLIIGLMVIFFLGDPSLQTLAWLGEMKIYLVTAAIALVSIPFVTSQLDG

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