Scaffold Ga0224505_10020294

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224505_10020294

Scaffold Ga0224505_10020294

Overview

Basic Information
Taxon OID	3300022214 Open in IMG/M
Scaffold ID	Ga0224505_10020294 Open in IMG/M
Source Dataset Name	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3006
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.05	Long. (^o)	-121.934	Alt. (m)		Depth (m)	11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012443	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224505_100202944	F012443	AGGAG	MYLSRLTFHTLPGKTHEAEEKLLTLLYWVENAGGLRPRVMRTYFGSLGAADLIFEHEVEDAGTLASQIRKVTENGEFPQWAKELSGLLKQSSRREFYQITSSAPRVILAAA

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