NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224514_10237869

Scaffold Ga0224514_10237869


Overview

Basic Information
Taxon OID3300022217 Open in IMG/M
Scaffold IDGa0224514_10237869 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.7Long. (o)-122.34Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073569Metagenome120Y
F092101Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0224514_102378691F092101AGGAGMNDTDKKIETQMLNNLKALKTALPTMDLDELKKVLKDQLQTCTKSEYIKLIKKTISWEEAHLDPDLIDQDVLNES
Ga0224514_102378692F073569AGGAMRVNKNNLLPWFTDDHDSLPPAYLASCRKFFKGLSNKPQASSNKLRQNVARQSVRFKSPGIRVKNRFQRK

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