NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224513_10189359

Scaffold Ga0224513_10189359


Overview

Basic Information
Taxon OID3300022220 Open in IMG/M
Scaffold IDGa0224513_10189359 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)805
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0224513_101893592F019909N/AMTNFEQHIGQELPQAILDHLHSRTTQEIYDQAHKLKFDSICPVVMENDSPELRKELKEASELLFKYIDFQSVTDEIWNSEN
Ga0224513_101893593F069998N/ATKKELIDFMSDYPDDAPVVIEVHDTTLYEDLYDFTFDEVSWTRTFPNGTQTEMHELRLCAINHSEK

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