NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226658_10380960

Scaffold Ga0226658_10380960


Overview

Basic Information
Taxon OID3300022222 Open in IMG/M
Scaffold IDGa0226658_10380960 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022124Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0226658_103809601F022124N/APDAIRAQVDTGAHVSCTDQQHMLHGYQEFTRSRPSPVKLMPATVNSDAVPKGVGYLHVPAKNAQGYLSVQTFYTPYLRTTVIDERDLVKAAKIRVKDIESDSITKHKDAGTFTYHAKHRMNSNKDVILHGILIDDKCYTGALIPPDLDPSDPKATPATSSILALESDPEFADQCRKATMLAIHGYHEAVETQLREEMTKLPKQFHSLPFP
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