Scaffold Ga0187827_10174587

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187827_10174587

Scaffold Ga0187827_10174587

Overview

Basic Information
Taxon OID	3300022227 Open in IMG/M
Scaffold ID	Ga0187827_10174587 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1487
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	18.2	Long. (^o)	-104.2	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008138	Metagenome	338	Y
F091868	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_101745872	F008138	AGG	LTAKIESNFGREIMKNIDAQWTRIENRHGGGIPDLYGIRDGVSIWLELKCINKNSINISPLQISWNYNHFQQNGKNYYIVRDTRSKIIKLYDGDKGRELKENGFRVPCTVELRPPYNWNELEYYFFDDEYWR
Ga0187827_101745873	F091868	N/A	SLIGYKQKGKIMGDRVSLSFKDNDGDESVVLFHHWGGTRFPKIAQEWFEEFKKEVKSQRGGISDPTTRFEARNIMAQFIGFLSKIPYSKECLGFEKDEKGESIISKPIYHDEHLSHSIYFGKDKNDGDNSDNGHYVINTRDGKMQDDKGQLIN

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