NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224507_10006293

Scaffold Ga0224507_10006293


Overview

Basic Information
Taxon OID3300022307 Open in IMG/M
Scaffold IDGa0224507_10006293 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4609
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.37Alt. (m)Depth (m)9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036312Metagenome170Y
F042344Metagenome158Y
F076108Metagenome118N
F079336Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0224507_100062932F079336N/AMETILRTELETADKRIIVLESTIETYKRIVAGLDERIELMEKSHKFELENYYTKNKTNES
Ga0224507_100062934F036312N/AMKRKLTHSLCEMQKVHKDLYEVFTTDYWDNGTHTIKDISHHSTREEAIEQKLINKHKNLN
Ga0224507_100062936F076108N/AMTRIELSDEEIEYTTYFPIPDPHDIMYSFEEMVRMYTQADIEVDNYIIERAKEIHLKNSN
Ga0224507_100062939F042344N/AMKRLFKDGIVTTLMGLTILSIAVCLYISKSHTETEAGAVAALGVLLLRAKDSLIGLTKK
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