Scaffold Ga0210310_1008356

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210310_1008356

Scaffold Ga0210310_1008356

Overview

Basic Information
Taxon OID	3300022369 Open in IMG/M
Scaffold ID	Ga0210310_1008356 Open in IMG/M
Source Dataset Name	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	995
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.298	Long. (^o)	-124.183	Alt. (m)		Depth (m)	23
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000287	Metatranscriptome	1370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210310_10083561	F000287	AGGA	MTVGGGAWRRPRMKVYDTNQEFGGNYYQPMIQYINHKDIYGPFSRKADVYLPHRAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHSPLDNVQTPYNPIRLLKGAPPGQECVNHYISELSILKTGNAKMDTKHRQHLAMIDACDDAYQYHHKLFGQGAVDRDFKFHNPQLVQDYVNQIRRC

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