NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210311_1017781

Scaffold Ga0210311_1017781


Overview

Basic Information
Taxon OID3300022374 Open in IMG/M
Scaffold IDGa0210311_1017781 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1166 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.235Long. (o)-123.909Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013534Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0210311_10177811F013534N/ALVLIAGLNVVGASEVEHRANPIRKVVTMLQMMQNKVSAEGKKKQEIFDKFMCYCNNADTLLGGAITAAENKIPMLESSIGEDAGLKKQLDADLIKHKSDRAAAKDAISKATAIRDKDAAAFAKTKSDLETNIGALDKAIPAIEKGMGGFLQTSAAQVVKQLSINMDMSGVDREMLTNFLASKNGYAPASGEIVGILKTMKDEMTADLNDATTAETAAIASFDELVAAKTKEIDALTASIESKTARSGELAVKHAEMMNDLDDTREDLAESKKFLADLDVNCANK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.