NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1011510

Scaffold Ga0181351_1011510


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1011510 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3601
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F003601Metagenome / Metatranscriptome477Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10115102F001165N/AMSSNKPTIPNSVDPQKLQFMQLTAKMKESADKYGVGFIGGFIAPDGEVFYMSNMNDEDTQALMPDQLK
Ga0181351_10115103F001120GGAMTKKSIISFDRTIHGVNITEHGIKSMTKAIKLGPFQLTLNANPNGVKGSFSIPGTGLSIPNIKLI
Ga0181351_10115104F020342N/AMPAHTDNINLFDRINLADCAKRRASANVLDSTRFEGEYHTAQLWMKYRCVNTPNYSYVDN
Ga0181351_10115105F001807N/AMTVLAIEHTSFTDTHVTVTAVVDEMRLLYHATHLDPEEWAPALCTTTVELDPQEPIPLDEDGFCTYLDQLDPQWQLVERDDLN
Ga0181351_10115106F003601AGGMPDYTDDQLLAMAMANLGEYITDNSPQYILIEDDPRNEEDYDTWSYGTEPLPHDHTWHSTSIDVEVSPSQAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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