NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1019690

Scaffold Ga0181351_1019690


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1019690 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2845
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062760Metagenome130N
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10196901F066774AGGAMTQDTTMGNLETWVRQLNGELNVQDIAKTRPAPIQDVISLYSVFLRHYDKVGLCAATNKRRSSRCNVKFVFDGNTRKLKSVELINQDEE
Ga0181351_10196904F063689GAGMEVLFRYLVFDDFGEPHKRFRTKHEAETYIINKPDHKIERLPTQPKENVFDLITDEPLF
Ga0181351_10196907F062760N/ALEALIKEGKTPQVTIKEKVSGDKRSLEANKFLWGKLYKSISQFTGYLPMEVHLLCGHLFLCEQKTINGVQVPYVRSTSDLTIEEFTFYIQNIESYFAQLGWSMDE
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