Scaffold Ga0224548_1006579

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224548_1006579

Scaffold Ga0224548_1006579

Overview

Basic Information
Taxon OID	3300022518 Open in IMG/M
Scaffold ID	Ga0224548_1006579 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1336
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0472	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016841	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224548_10065793	F016841	GGGGG	VTLSGRDVLLVGQTFHGAQVLTDRLRRWGFRCRSASNMRAASDLLSSHPIALVFSSANLSDGTGFGLLMALAGLPITPPLCLPVENSCYWLPAIDAGKACLGLTTLRPSEFANVLEEMTRYLTAAQGVIAGSLRTRNKRFVPQKERKP

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