NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224548_1016660

Scaffold Ga0224548_1016660


Overview

Basic Information
Taxon OID3300022518 Open in IMG/M
Scaffold IDGa0224548_1016660 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062503Metagenome / Metatranscriptome130Y
F072641Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0224548_10166601F072641N/ARSVFDDKKVLLIDPHQCTRDVRASVLRSRGIEVDATDSLQAARSLWRPKLYDLILLAARGHLPGEALDFYVEIKHASPGERVVFLVGPPTFLSLTWPTEVMTTEKEPQQWAETVRRFVTA
Ga0224548_10166602F062503GGAGMKDLSQVLSQKEMDIERVRKEIKALHFVIPLLAEDADGFEHGLASLPVSQLGGTGTTAVKGQPRREHELAR

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