NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242668_1079217

Scaffold Ga0242668_1079217


Overview

Basic Information
Taxon OID3300022529 Open in IMG/M
Scaffold IDGa0242668_1079217 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024610Metagenome / Metatranscriptome205Y
F027914Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0242668_10792171F024610AGGAMKSNTLVRSLALAAALALTVPVFAKPVAKALAVPHAVKFGKVDVKAGDYRAMIDDNHITLLNGKKVIAESAGRWEDRSQKSPYTVIVSNEDGHVLELRFEGKTQVFVLSE
Ga0242668_10792172F027914GGAGMAASLLVLLSGELLKWQFPAVAAGEKLASLVSALNL

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