NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242658_1006493

Scaffold Ga0242658_1006493


Overview

Basic Information
Taxon OID3300022530 Open in IMG/M
Scaffold IDGa0242658_1006493 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F044745Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0242658_10064931F023966AGGAGGMDHDNRVLIRRGARELSEQEVESVTGAFKTRRTLTPCFVDSKQQFLNGDQAIG
Ga0242658_10064933F044745AGGAGMNAQNRVLSRKGARDLNEHEVTLVAGGLRTLTACTLAAAGTADGDTFHSECGSPDQ
Ga0242658_10064934F044745AGGAGMNDQNRVLARKGARDLNEHEIERVAGGLRTATKCSVTPAGALDGDTFHSECGSPDQ
Ga0242658_10064935F011803AGGAGMNNQNRVLIRRGARELTPTESEIVNGGFATFSLCTNAPHPDGDQHVGEFGC
Ga0242658_10064937F011803AGGAGMNDQNRILIRRGARELTPTETDLINGGFRTLSFCTASPSPDGDQHVGEVGC
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