NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212119_1000272

Scaffold Ga0212119_1000272


Overview

Basic Information
Taxon OID3300022543 Open in IMG/M
Scaffold IDGa0212119_1000272 Open in IMG/M
Source Dataset NameIndian_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21715
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (22.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F014605Metagenome / Metatranscriptome261N
F039629Metagenome / Metatranscriptome163N
F068589Metagenome124Y
F069672Metagenome123Y
F085401Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0212119_100027212F039629N/AMIEALDEITEIPFEVFWAKFMELYPGIYDQFTTEVYWVKMKEANRILAFEYLCKFGSDYKEPWKHLHHFDLPW
Ga0212119_10002722F085401N/AMMSAQEYGVLKGYSEKSTRVHQIIRSGKFPSEWVQAPKKIGNQWIVFVDPNWIRDGRG
Ga0212119_100027220F001775N/AMEDKEKIRIATLSFMIGVVLTFVIFPRPESEVVYRYSTRVETDTIYSREIDTVYVPKNKIKTQVLRDTVLIDFKPQISLFESTFPFEYGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETRTIIQKPKGIYLGGVVSSKMELGAKVAYLDNKYLFEYQYQPLQKVHQIGVSKKLF
Ga0212119_100027226F069672N/AMRLIFILFAFISLECNAQYYVMVAPNVAFDTKLQDTKNLLGGTIEVGKYFGDTAIGINSGWWTFDKKDFYQEIMATFPIYDRFSVSAAIGYFYSHKDITMEYDFNYTIPMELGYSFVLSYGAQSAFGDTFGAYSIGINKDFKIK
Ga0212119_100027230F014605N/AMKVNLAVAVTDIEGNKIPNEKGEEMHLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKEKIKAKGFTVLILAPLYEALSEK
Ga0212119_100027231F068589N/AMKQIEPVSIWDNGTVQEAKILNAYAINVTLGTSATFYYQLFAESIDLAVGTQLAQGNLTMTGEAYAQWEMDDYAWDWVAHQLNLTITGDYVPHVPPQPETQEISQDTIS
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