NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212119_1007890

Scaffold Ga0212119_1007890


Overview

Basic Information
Taxon OID3300022543 Open in IMG/M
Scaffold IDGa0212119_1007890 Open in IMG/M
Source Dataset NameIndian_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2232
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010462Metagenome / Metatranscriptome303Y
F043354Metagenome / Metatranscriptome156Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0212119_10078901F043354N/AMIKMEKLKQDVSHYQLYAGKTYMQYEQDKYSIYQNYLYKRALYGLESLTEKELATICSKKKQRINNVYKRAQTVLNTLKQKLTIKYSNDIFQRFFPNSKMTQDILNYSEIDEKYKN
Ga0212119_10078902F076942GAGMNSKVIVLAEETTGAVVNVSQNNSDYGYIRVQQVRTMIDDNGFLRRKPVSALIPGSVSELQETGFFAGQQLDGKIIVEESLEPFNDKTPERDLKIAGETGVVCTLGGLPIYRRTKFSFDSNGADSLIKHDNVEQLRAAYSAQNAKSTAIQPNDDFSIGG
Ga0212119_10078903F010462N/AMLYQLPNGKVVHLSIEEYLDLTDEDIQYLMSLDFGEHIQNPFTGSAVDKNIKEKYYDFEFLPEDDEEINNIISDDVPFDDIIDLSSPTE
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