NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212119_1011828

Scaffold Ga0212119_1011828


Overview

Basic Information
Taxon OID3300022543 Open in IMG/M
Scaffold IDGa0212119_1011828 Open in IMG/M
Source Dataset NameIndian_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F028489Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0212119_10118281F000716N/AKLKQDLKNYQMRSHTVMSYEKDGYSQYQNYLYKRALHGLSALSQEELVAMCSKKKQRIINVYKKAQVVLNKLKQQATIKYTNFIFESLFPNSPITQALLAETETDEKITNTLNFKDLGIDKSQIITIFIAEGVLPKNFLSLDAPQSQLPRLKNDKG
Ga0212119_10118283F028489N/AMKMIGKDLKIKHTTTYSTFSILPMNRAIDSKHVQKMIASLRLQGCLRVVICCRTNIIEGEWKTYIIDGQHIATALEREGQPIPYMEIEIDSEEDLIEKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWKNMYDIEITMLAMIGVNNSAIRYSTGVIKTGQFQITNPQAEIMCKAFNDIFLKIGMSDRAVKFQFLNAFLQAFNPKYDHDKTMAAIDKHLKTVKLMAIGDETGSFIRKQIFKLPK
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