Basic Information | |
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Taxon OID | 3300022552 Open in IMG/M |
Scaffold ID | Ga0212118_10348655 Open in IMG/M |
Source Dataset Name | Guaymas_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 808 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017081 | Metagenome | 242 | Y |
F056226 | Metagenome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0212118_103486551 | F017081 | GGAG | MEERGRKWWWKGVCILGIFTFLIAIAQAIDITEITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNNTYYVKVCDNENCSDVMSVNVSEEEKLLEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAIFFGGIFLAYWIRQEDVMLPSIVGMIGGVA |
Ga0212118_103486552 | F056226 | N/A | VQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME |
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