Scaffold Ga0212124_10009304

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212124_10009304

Scaffold Ga0212124_10009304

Overview

Basic Information
Taxon OID	3300022553 Open in IMG/M
Scaffold ID	Ga0212124_10009304 Open in IMG/M
Source Dataset Name	Powell_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6897
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	50.0621	Long. (^o)	-124.7214	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016953	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100093043	F016953	N/A	MKAHLALEWARFRKALAAAGDIGELSLEEWRVVADRDRKSLPPALSVAAVQGLLKLEKSGLRGQVIRGGEETAIPTMKLVAQAQAHEVRLQNADHSEAYAVMAYQAGRRLGLDAAQAVVFGDALAYLMTGWMQVHAESGKTGRVIMEFQKAAGAPPEGGFLWSQLQSLSCRAGFKAMAEMARLMGTPAFR

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