NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212124_10038078

Scaffold Ga0212124_10038078


Overview

Basic Information
Taxon OID3300022553 Open in IMG/M
Scaffold IDGa0212124_10038078 Open in IMG/M
Source Dataset NamePowell_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2913
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F007470Metagenome / Metatranscriptome350Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0212124_100380783F001125GGAGMGDRANFGFRDSRENVVFLYGHWAGHNMLAKLANAVQAAESRWQDDSYATRICISNLIGEDWTQTTGWGIYINQLGDNEHKVPVIDWKNQTFTLYEEDLSTVVFSTSLTSFVDKYSRLVM
Ga0212124_100380784F047650GGAGMNSEDINPIYYCDSCSVAQASHLIKLLDGELSFCGHHYFKNKEALDKQSYETIQLNKAEEAIPQLTKAE
Ga0212124_100380785F007470GAGMFLNTKQRDIKGDTMDYQDGFQDGVKFAREVIINNLRLWAETSDDGGVMDEIGDRIEFGVINYEL
Ga0212124_100380786F000311GAGMYFELTAPDRLSLEMAYWDAQITGLDPTFMPPLTFNVGTGSIEKVSRIRDKYNLTESYVSEYETTGY
Ga0212124_100380787F000714N/ASPLPTKEEKMETTETTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAYEDSDDKETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDFDLESEVTDALYADSNNGNIQIDDTEVCNVRES
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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