NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212124_10251808

Scaffold Ga0212124_10251808


Overview

Basic Information
Taxon OID3300022553 Open in IMG/M
Scaffold IDGa0212124_10251808 Open in IMG/M
Source Dataset NamePowell_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039470Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0212124_102518082F039470GGAGGMAQTETWTDTGIAELILLLREEAATGMESIVALEMATPCTAAVASTYADPADTAVHHTDSGLAIQAIDTVGGDTTNTAGDTITFDHVFTATETRNVAGIHVCNNDDNVTFIECCFNAVLAVENTDTITIDGQSTIDQA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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