Scaffold Ga0212093_1007614

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212093_1007614

Scaffold Ga0212093_1007614

Overview

Basic Information
Taxon OID	3300022554 Open in IMG/M
Scaffold ID	Ga0212093_1007614 Open in IMG/M
Source Dataset Name	Dewar_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12655
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	49.9543	Long. (^o)	-116.5155	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099502	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212093_100761412	F099502	AGGAG	MTEKANQESALGTIIGWGSLGIFALWFAYQVGAPLLIGEQWAEKQNDAIELVKNSKPLGNETLYDMIRAYSLKAKENDFFVGEFSWSAIQKDGPEYEVTLLWTEGDQKKVALWRVNLENKEVRPQGDAASLPQRLAAGPPKKGTGS

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