NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212093_1011872

Scaffold Ga0212093_1011872


Overview

Basic Information
Taxon OID3300022554 Open in IMG/M
Scaffold IDGa0212093_1011872 Open in IMG/M
Source Dataset NameDewar_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8123
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084273Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0212093_10118723F084273GGAGGVKSIIRLLVVAVLLLAAGGVDAAAIDKDILACGHNIGKLTLSDPVAYSTTTQGGVTVSGQFAGNYPPLRNGVEIRWVQLISTSHPLNTNAAPNTPYFDPGELDMTGDNDPFYWNTTLKAKDGNDYPQYYYVNYQINAGKGIKFFDEPKRSKADAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLTQYFPGWSMSDACKNCLVPEPVFMQMGALLGMSGLGTLAARRRARRRSG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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