Scaffold Ga0212088

Basic Information
Taxon OID	3300022555 Open in IMG/M
Scaffold ID	Ga0212088_10002392 Open in IMG/M
Source Dataset Name	Alinen_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022555 Open in IMG/M

Scaffold ID

Ga0212088_10002392 Open in IMG/M

Source Dataset Name

Alinen_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39453
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (75.41%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

39453

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (75.41%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F013732	Metagenome / Metatranscriptome	268	Y
F024467	Metagenome	205	Y
F027395	Metagenome	194	N
F040987	Metagenome	160	N
F042707	Metagenome	157	N
F067353	Metagenome	125	N
F091222	Metagenome	107	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000239210	F013732	AGG	MPAINLPNNQSAILYSRDEISERTTRSISRAYMKAAGSAAKLTNLGFDETKPESWTIFAEISDEDRDNLDGYQAALIVGLVKSWSLGDLPTLDSALDLPKPVFESLAEACSNEFNNSTDFSPDIDPKAPTAD
Ga0212088_1000239225	F042707	GGA	MTQKGILDEIEIIEDLVDQMNAAGEQSAICEATYKALYAQTRLTIRALSKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG
Ga0212088_1000239229	F040987	GGAG	MQSTTLQRGAEERKVILYKNGESFLITVEVLQSLFHEVGHTETLYTPKSEAQAEFLYGSAVRFLQGFQYIVTDGVLS
Ga0212088_1000239231	F067353	AGG	MSKNAERMIRDKNQALITLNALNETLINDLVRRASIRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKKVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSRIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAKTLEN
Ga0212088_1000239237	F096503	AGGAGG	MFKLNYRTGRKLVWGTAAIVFLYVDVTATGGIFFWATVYGLGTAVVVATLLALISK
Ga0212088_1000239243	F091222	AGGAGG	VKLIDTLTELDFVRESEGDFSNTYRATGFDLRSNVFVNESLNESQVQVCLMPYDPDDEPLWVTFSKYCSAVDNLLKLWTGKDD
Ga0212088_1000239245	F008860	AGG	MSAFVKSDTRTPVPGDIVFAHSNGIMGRAIRFGEFLRWRKGSHWNHACVISRVTQDGTAYVIQADLHGVNEARLDSVGEYVIIEPPARVNRNKILAFTKAQLGSKYGILSILSIVTDIITPNWFPAMRRKNSWICSAVTGEALRYGGWLHNFPDIYTVTPAQLFDALATTP
Ga0212088_1000239248	F027395	N/A	MSYNIIENTTIQFYTSQPFTSIAGTVVNPDKVRFSYSVQGQNEVSYTWTNPTGDPTNTIKQGDSGTGYFYANISTVGQPGTWSWSWYGYPSSGADTTATQVAAQGTVIVSASDL
Ga0212088_100023927	F024467	N/A	MQSVPSFENQEIDIRIDVTLLAKALANDPAFIAAITKAVRDQMTKDVRWMGNLFAKWASTQPPAKPTRNRAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212088_10002392

Overview

Ecosystem & Geography

Associated Families

Sequences