NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10005279

Scaffold Ga0212088_10005279


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10005279 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23921
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F012318Metagenome / Metatranscriptome281Y
F017967Metagenome237Y
F028086Metagenome192Y
F059611Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_100052791F012318N/AMAYNSAFAPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDGTSTPVVTAPALTIPSANTLYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA
Ga0212088_1000527919F028086GGAMTDEKIPFGGSVKVPSDDCEEAFFAIYPDFFYEGSTSLNLWTQAWQASLDHVENKKPLIQLI
Ga0212088_1000527922F002539AGGAGGMNHHIWTASGTDITLRWRKAGWIPPSEIQAYKDKWKYFQELPLRSLDEQGKIEYESTLKLNKIFRIK
Ga0212088_1000527923F017967GGAMAIKWYVKAPVSEYVAQDGTSKKRYLTVGIVTETKKGDLMLKLEMIPLLGLKEGSFWAYLNVPEDKVDTPKSSNLADLESDIPF
Ga0212088_1000527935F059611GGAMKDFSQPFLDAKRLLDEYYKAMIAQDRATAYQIANSFVETALKLEDIAHAD
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