NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10007360

Scaffold Ga0212088_10007360


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10007360 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19060
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (95.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035675Metagenome171Y
F044911Metagenome153Y
F068377Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0212088_1000736010F068377GGAGGMRESAKRAPVKRLTRAQIKETLASTPIESILGVKQPLTNKQREYARKLAEGTMSKRQAYRETYNAQSAYTLASDPYKLASDPRVIHEVQAYKLALEAEKLRTPRELKALLIHQLVKHSIDEDFPPAQRMKALELIGKLYDVGAFMERKETTITHVKSGDLKAQLLERIKAVVDVDAKPARAGGASLLAEISEGRDPTGGAPPAQASEAGGDPTHTIPLTQSLENTVDTPQLPSTEPPPSPSET
Ga0212088_1000736029F035675AGGAMNKGLLDDVPLCNKERDKAWEAFIKRKDVKKMFLDDKEFSFPLNGAYYDLWSICWAKAWDKGFHTAVEKFKDKNI
Ga0212088_1000736033F044911GGAGMYDDELHEKASAYASNRKDAYLEAMKLKEVDHMSEKALNDRWLAHYEGYREGYWVAAGDSKFSTDPAKLKDKNT
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Institute for Fundamental Biomedical Research
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