Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000005 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000005 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	940844
Total Scaffold Genes	887 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	301 (33.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

940844

Total Scaffold Genes

887 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

301 (33.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004361	Metagenome / Metatranscriptome	442	Y
F004776	Metagenome	424	Y
F006277	Metagenome	377	Y
F007433	Metagenome	351	Y
F009626	Metagenome / Metatranscriptome	315	Y
F058024	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000005271	F058024	GGAGG	MKGTKQLLDHAFTLARRARDPVPSELPFGMETAVLAHWRNSCASSKIDIGMLRVFRWAAILACVVAVAGGAWKREDIAQISQRLDPETRIVDSALLAGLDQ
Ga0212123_10000005377	F004361	AGGAGG	MKKCHWTPKLIAFLFAVANLGFATAYAGPGYEYPRGELMGNSGLTIFREADYGNQNGLSIYIDGIPITTLSRGEGYRAILRPGRHLLTVANTPSPYGKTKFTTRAIHLAPGQNYAFTAIWDVETITLEDGGYQYHGFYR
Ga0212123_10000005557	F006277	N/A	MNDTDAGQKSGQIRLLYKIIAYVAAWIIALLLTAPGMWPLAYMFPLGLIAVFDRHLANDGGWGVFIGLYVVYIVHGFFYFRSKTTLRTAILFGVLVVLLMCNVAGCREMIHSH
Ga0212123_10000005618	F004776	N/A	MLTTFSRRVFGALLVATFLPACDIHRPTIREYNTDQAGRVSVSNVSEDQYWKERVDERIAAEIAHEKPEAGYDTWQNYWRWWYSVLRRKKKPAYKSQEFRTSEDMVNYIKEKRRTKGLPTYED
Ga0212123_10000005734	F007433	N/A	MKTIIPLFICVLALAGCAFMKKTSQQPSGQHQVSGKLQKKTETFTGKVVFVDGAYRFAPMNEPKTLLRLTRARRESEFAAEQIDLRKYYEKTLSVVGTRQNDWIWGADVVGQWTPPGGDTGPNMNAPKPTRP
Ga0212123_1000000589	F009626	N/A	VAARARTSLNNGIGRFCPVVFLTVIVLLCSCDSNFFGRESKEIAGGYHLKRADNPNQFVLTIPNESGGLIIDEIGWRKPLIIARASGSQYWDVIDTTRTQHIRVSDSQLKSDPIYQSIQIKPSEIAWKDLNRRKRLW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences