NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000040

Scaffold Ga0212123_10000040


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000040 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)419246
Total Scaffold Genes388 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)278 (71.65%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000138Metagenome / Metatranscriptome1954Y
F000530Metagenome / Metatranscriptome1047Y
F000883Metagenome / Metatranscriptome849Y
F000912Metagenome / Metatranscriptome839Y
F002831Metagenome / Metatranscriptome527Y
F005428Metagenome / Metatranscriptome401Y
F008200Metagenome / Metatranscriptome337Y
F016558Metagenome / Metatranscriptome246Y
F019511Metagenome / Metatranscriptome229Y
F043130Metagenome / Metatranscriptome157Y
F088562Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000040135F016558N/AMEILTPKAVRRSTRVRAELPVSVTSLDRRRPFAEKCLVLVVSAMGCGFRSTRALQIETPIMISDLPGGGSVTARVANCLPLGTDGKYFLVGASLYTQGNVWQIANPPEDWNGAAKDGPAPNVANSEADDAAKVTVNKKVWPYNLFTEGVEAHPRRK
Ga0212123_10000040136F000530N/ALFFRNFATVGVAAILWDMAEQVNPTEPVASGNQPVDRPFRVKLRGSVLALVRLPNRRSVRAAFHQLSTSGGVIHLEKPLDEKLEVELIFHLRESTIRSKAQMLFPMWATQGWMQPFRFVNLPDASREILDTNLKSFLSEEPKGTAAGAGTS
Ga0212123_10000040179F088562AGGAGVTEDRKLKLVVAYDRNRNEYSLVEHNQTSEEVQSFLNQWTRHLREGNSFIVLDQTRRHATEKAQSCRACRDTAARSARLEPQAKFIRRKNDATEA
Ga0212123_10000040217F000883GGAGMSGQVVLYFEDQADALRFALAAGSVMAGDGAKMTNDLVQETARVTRIRLDAVNAGGKKATPPRVA
Ga0212123_10000040228F000912N/AMSLDAFVRCTCIRDGRAKPHPFPDRFTWDEAGSPSLSGDPTEDEWEAHDQWVQGSCDHEGYLASESLGNITRAQHLREFLRGLQGNPGPKFPILLKQVVYDGTHTGDWIPAKESPALLREVDLVLGSSDILTEGEKEFFQSMKRLCEASIATGNPIMF
Ga0212123_10000040237F002831N/AMRVPSPEIHGPSAEAEREVSHKNHRHAVYASETAGLLLIALVLLVLTLVRYWHEIHWSLR
Ga0212123_10000040269F008200GAGMNEFGILTNRKRALIALIHSVVFLGIAIHGFASPKAGILLPGFVATADLILIAIYLVVASILTWLVSISRGTKERLYFVLCASSATFGLLRTIFGDAALPVAQYMRVIMLSSAVLVGTWILRSFSRPVAEDVLSD
Ga0212123_10000040277F000136GAGGMAKSKLRILYGEGDEEVLKAQAAIFEKAGHSVQPALGRKAVDEAIRKGAFDLVMLGATLTRNDRHHLPYMVKKVSTETKVLVMHADGTRHPYVDACTDTGASMEAVLNRIEAMNLTGAMRAAAAAAGR
Ga0212123_10000040325F043130N/AMQRTLLMRLSIGMAFCLLASNCRKSGQEPNLHDRIMSAHTSQYCRPPDACANPHVLAVESGYEVTTFLGSKPQYAHVAAKDLATYLQALPMQVWPRGPSIALSPTDVITDQHAINQNLLAAQQLCRSLGLEVQVIPGG
Ga0212123_10000040384F005428N/AVSRLSIALVCYVVLGALTWATITDPKIRAGTLVILALFAVKSVLRRNDVLHPDKSGDPE
Ga0212123_1000004044F019511GAGMTPDERERMHILCERIAKEQDHDRFVKLVQELNDLLDHKEQRLEDSSKKA
Ga0212123_1000004088F000138AGGAGMHMQLVNSYRIPFTTLISYIPVIATVVTCFFSVILARATLRYVEATDKGLALAREEFEREWSPDIHIKMERVSASEARIIATNLAKTSVLLQLLQLRKLSHAVPFERFRLNDPLVGGMTWSQEMGKRILACTGEEFEGPIAASMTFYAAGRMYRTDWFRAQITVRDGRITSLEPSTMPARRVRQIERDGPERRREFAQDVSADAGPDESGANADESAFAAEA
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