NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000049

Scaffold Ga0212123_10000049


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000049 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)367582
Total Scaffold Genes345 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)254 (73.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001701Metagenome / Metatranscriptome649Y
F001759Metagenome / Metatranscriptome640Y
F034490Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000049327F001701GGAGVNPAGSIKFLYAAYIATWLIHGLYIGSLVRRYGRLRERKKELGK
Ga0212123_1000004951F034490GGAGMDLTRPTAAAPGKLVPPALQPESSVRSDLRNNDLRNAVRNDPVAPRKSSGYGLPCSNCRLYYPANLDTCPACNSGERVSASVVAIIPPVQPAPDIIPENAVEQEKVEQEREEFLKQFKSQLVAAHAEAANSQTVCNLGEHQPEEPESASICKPCYDRLQERVDVFEAALHIDLKEAAQIIYDAVWADPSDPSKTYTNAASALITELRRRSGVSSMLGPFHPLGN
Ga0212123_1000004972F001759N/AMTLKSALQDLRETTLAAISGLLGKLSYLASLRRREGGYLHWGLSLVHGEESSERALRAAQTEALSNVLRTPISELVEDLRESNRNSDKTAEGYVENMREQFTELLPSADDAASAAHLNSVLIALSSLEKAQKAATPSTS
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