NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000056

Scaffold Ga0212123_10000056


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000056 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)355120
Total Scaffold Genes317 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)221 (69.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044099Metagenome / Metatranscriptome155Y
F081465Metagenome / Metatranscriptome114Y
F104588Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000056111F081465GAGMLGLNPKDGSSLTWKFVQYYEDGMKEEFTGPVGSRYPAPVVTLKKIETSTK
Ga0212123_10000056202F044099GAGMFGLVASFLLFAADLAGTYKGTYSGSAGASGDFVISLTHAQGGEWKSEVTFTLSGADVKTKITSLAIDGSKVKIVYEFDLQGTALESTVTGELNGATLAGDYHTKVVADSSAVDEGTWKTTASQ
Ga0212123_10000056317F104588AGGMAVEAIALDDENTHHLIIGLNRENVESILRGDVLTLPRGIVLELSEASDIVVLFAETDEELGKRFPPALRPV
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