NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000086

Scaffold Ga0212123_10000086


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000086 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)312382
Total Scaffold Genes335 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)271 (80.90%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004622Metagenome / Metatranscriptome430Y
F018572Metagenome / Metatranscriptome234Y
F038779Metagenome165Y
F056486Metagenome / Metatranscriptome137Y
F070339Metagenome / Metatranscriptome123N
F075169Metagenome / Metatranscriptome119Y
F099582Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000086134F038779GGAGVDPGLRRDDAFRRGWTPAVLFAAVLTVVPFGLLAAEAPPCVRGDIVLWGDGKHDDTAALNAWLRGDDLVWAATGEPIGEAIADRDFRLSAAIYVPGGTGRRLQRFRLIWPERGETVTGGSVQSGDDPDQAPVVSGVEIVGGDPGEGVPLETPDIKPADRRDPSRCAVS
Ga0212123_10000086135F070339GGAGMPGLALFRGTMSALATLFGGLGIFFLYYSFMHPELAAYALVFLGSAWAIAWSTSTSK
Ga0212123_10000086140F075169AGGMIEQPVSRVGEYRNQAAKLRQLAYRTFYTESRHKLLMLADSFEKLAERVEARGAAAGQAA
Ga0212123_10000086302F018572GGAGGMPFDGVGLGLDERVGKIDKVIELLATPDRWCKGTLKTHDGRRCIRGAIMAVDGVGTLQPVVLRAINEVTGRHYRRIESFNDHPDTDHSQVAEVLSRARDDLVAGRLAVLRSKPVAAQTGWRARLTGWLEAFRG
Ga0212123_10000086323F056486GGAGGMDQRIDQPIGQRIVQDPTRARQGSKPGIVRYVLVISTLLVVIAFAVAYMTSV
Ga0212123_1000008634F004622GGAGMVWRGSTIDPMADTAASAVLEAFEEARGAGLPSVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0212123_1000008694F099582GGCGGMKRLLVALLFALALVPPAAHADEPIGCALTTAPLMAQPDGSILIGCNGGISDAFGEQLVLVLNQILQNRMDPEAVLAKLGEVASIPDEGIARTVNEVQRHAIIEALSGKDSAQVAIVAHPLVDDAAEFAKGIAAPLTMVGWQIEGNQIRRAAPRTVEAVTGVAIVVRDRDAAPPKAALLKKALGAGSVAAQVVSDPSLPENAAMIWIGRRPVFMKQ
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